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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-01-17 14:19:53 -0500 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-01-17 14:19:53 -0500 |
| commit | 3bc08d4b610f36887bdd60ecf361f5df75eba944 (patch) | |
| tree | 06845aaae737a92aa48a2ff033836bc8d4dbe3e1 | |
| parent | 57f7aefd4a3ff35ccefb6d944bf7408ffd2c0e4f (diff) | |
rename select_kmers.sh
| -rwxr-xr-x | SelectiveGenomeAmplification.sh (renamed from select_kmers.sh) | 6 |
1 files changed, 2 insertions, 4 deletions
diff --git a/select_kmers.sh b/SelectiveGenomeAmplification.sh index 3d10bcd..2b43a47 100755 --- a/select_kmers.sh +++ b/SelectiveGenomeAmplification.sh @@ -9,12 +9,10 @@ # temp directory : ${tmp_directory=$PWD/tmp} # min/maximum kmer melting point -: ${max_melting_temp=18} +: ${max_melting_temp=30} : ${min_melting_temp=0} # minimum mer count -# ! you can supply either a percentage like this .5 -# ! or you can supply a raw number (100) -: ${min_mer_count=1000} +: ${min_mer_count=0} # maximum mers to pick : ${max_select=15} # mers to specifically IGNORE, space delimited |