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path: root/fly-tools/standard-deviation/StandardDeviation.cpp
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#include<iostream>
#include <cstdlib> 
#include<fstream>
#include<iomanip>
#include<cmath>
#include<vector>
using namespace std;

vector<double> currentHistogramValues;

int main(int argc, char* argv[]) {

  // argv[1] input file containing the list of files
  // argv[2] output file containing the standard deviation and file name pair
  // argv[3] data file path
  // argv[4] data file postfix of metricname

  if (argc < 3) {
    cout<<"Please provide the parameters ./executable iputfilename outputfilename"<<endl;
    exit(1);
  }

  ifstream inputFileNames(argv[1]);
  ofstream outputFile(argv[2]);
  string prefixPath(argv[3]);
  string metricName(argv[4]);

  if (inputFileNames.fail() == true) {
    cout << "Input File can not be opened"<<endl;
    exit(0);
  }

  outputFile<<left<<setw(30)<<"File Name"<<left<<setw(20)<<"Standard deviation"<<left<<setw(20)<<"Mean"<<endl;


  string currentFileName;
  while(inputFileNames>>currentFileName) {

    string currentFileWithExtension = prefixPath + currentFileName + "/" + currentFileName + "_"+ metricName +".txt";
    cout<<"File"<<currentFileWithExtension<<endl;
    ifstream currentFile(currentFileWithExtension.c_str());
    if (currentFile.fail() == true) {
      cout << currentFileName + " cannot be opened"<<endl;
      exit(0);
    }

    // N = sum(H_i) for i = 0 to M-1, M = number of samples in the histogram
    // mean = 1/N*(sum(i*H_i)) for i = 0 to M-1
    double currentValueOfHistogram;
    double sumOfValues = 0.0;
    currentHistogramValues.clear();
    double i = 0.0;
    double N = 0.0;
    double M = 0.0;
    while (currentFile >> currentValueOfHistogram) {
      sumOfValues = sumOfValues + i*currentValueOfHistogram;
      currentHistogramValues.push_back(currentValueOfHistogram);

      N = N + currentValueOfHistogram;
      i=i+1.0;
    }

    M = currentHistogramValues.size();
    // mean
    double mean = sumOfValues/N;


    // sigma^2 = (sum( (i-mean)^2*H_i ) )/(N-1) for i = 0 to M-1
    double standardDev = 0.0;
    double sumSquaredResults = 0.0;
    int j = 0;
    for (i=0.0; i<M; i=i+1.0) {
      sumSquaredResults += pow((i-mean), 2.0)*currentHistogramValues[j];
      j++;
    }

    // standard deviation

    standardDev = sumSquaredResults/(N-1);
    standardDev = sqrt(standardDev);

    outputFile<<left<<setw(30)<<currentFileName<<left<<setw(20)<<standardDev<<left<<setw(20)<<mean<<endl;

    currentFile.close();
  }

  inputFileNames.close();
  outputFile.close();

  return(0);
}