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// our malloc checker
void check_malloc(void *ptr, char *error);
// count the sequences in a fasta file
unsigned long long count_sequences(const char *filename);
// normalize a matrix by dividing each element by the sum of it's column
void normalize_matrix(double *matrix, int height, int width);
// load a sensing matrix
struct matrix *load_sensing_matrix(const char *filename, unsigned int target_kmer);
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