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# Quikr #
This is the homepage for quikr.
## What is Quikr ##
Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that
utilizes sparsity promoting ideas from the field of compressed sensing to
reconstruct the composition of a bacterial community (when the input data is
454-like pyrosequencing data). This extremely fast method comes with a default
training database but can be custom trained. Typically reconstruction is
accurate down to the genus level.
## How Do I Install Quikr ##
Please read the directions on the [installation page](install.html).
## How Do I use Quikr ##
We have several ways to use quikr. There is a python module, command line
scripts, and matlab scripts.
+ [Matlab documentation](matlab.html)
+ [Python documentation](python.html)
+ [Command Line Utilities](cli.html)
## Contact ##
For issues with the python implementation, contact gailro@gmail.com
## Contributors ##
+ David Koslicki
+ Simon Foucart
+ Gail Rosen
+ Calvin Morrison
+ Jean-Luc Bouchot
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