quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2013-10-28	update Makefile to be more sane and use targets correctly	Calvin Morrison

2013-10-28	Update quikr_functions to read our sensing format	Calvin Morrison

2013-10-18	add kmercounting code from dna-utils. update our make file to support ↵	Calvin Morrison
	debugging, and update quikr to count-kmer code internally
2013-09-05	last fixes for 1.0.4v1.0.4	Calvin Morrison

2013-09-05	bump to version v1.0.4	Calvin Morrison

2013-09-05	Remove debugging version	Calvin Morrison
	remove the debugging option for quikr, since there is not a reason to keep it anymore, consider it cruft. Our users are unlikely to ever use it and the same for us - remove from manpage - remove from quikr.c
2013-08-29	parse -h and --help and print out the help message	Calvin Morrison

2013-08-16	Merge branch 'master' of github.com:mutantturkey/quikr	Calvin Morrison

2013-08-16	remove unused case	Calvin Morrison

2013-06-13	use readdir and #omp criticalv1.0.3	Calvin

2013-06-12	update multifasta paths	Calvin

2013-06-12	fix case	Calvin

2013-06-12	fix missing comma	Calvin

2013-06-12	add --version and -V	Calvin

2013-06-12	use larger size for count_commmand, remove extra quotes, and fix a broken ↵	Calvin Morrison
	check in multifasta2otu
2013-06-12	Matlab: move multifasta2otu into the main quikr folder	Calvin Morrison

2013-06-11	Merge branch 'master' of github.com:mutantturkey/quikr	Calvin

2013-06-11	finally push this patch to fix the lack of an end	Calvin

2013-06-11	remove file	Calvin Morrison

2013-06-11	remove extra word	Calvin

2013-06-11	updated functions with long	Calvin

2013-06-11	Merge branch 'master' of github.com:EESI/quikr	Calvin

2013-06-11	use int64_t for NNLS to avoid overflow issues	Calvin

2013-06-11	small edits to man page	Calvin

2013-06-11	use longs instead of ints, fix a mistake in the --help	Calvin

2013-06-10	finish gzip decoding, YOU MUST retrain your api	Calvin

2013-06-10	native zlib decoding for quikr/multifasta, was done earlier but never ↵	Calvin
	commited for some reason
2013-06-10	remove unused variable	Calvin

2013-06-07	quikrCustomTranied was not using the specified kmer. Use the correct kmer ↵	Calvin Morrison
	and also rename rws and clmns to rows and columns respectively :
2013-06-07	free getline's calls	Calvin Morrison

2013-06-07	updated help text and manpages	Calvin

2013-06-06	fixed a malloc error, and fixed some strings	Calvin

2013-05-28	modified quikrTrain.m to not depend on a mer file, instead use the ↵	Calvin
	generate_kmers
2013-05-28	removed files	Calvin

2013-05-28	removed unused nbc code	Calvin

2013-05-20	use nnn instead on n*n for nnls	Calvin

2013-05-20	updated documentation strings, add man page to be installed globally	Calvin

2013-05-19	native gzip decoding	Calvin Morrison

2013-05-16	used newlines in readme for clarity, update our references to the ../../../data/	Calvin

2013-05-15	python: add some more descriptive comments, use lamb instead of default lamb	Calvin

2013-05-15	removed the bsd license	Calvin

2013-05-15	added file checking for multifasta_to_otu	Calvin

2013-05-15	add some error checking	Calvin

2013-05-15	cleanup kmer/lambda default values	Calvin

2013-05-15	add -d flag for debugging so verbose doesn't take longer, use generate_kmers ↵	Calvin
	instead of a hacky awk
2013-05-14	release1.0	Calvin

2013-05-14	add some documentation	Calvin

2013-05-14	delete spurious print	Calvin

2013-05-14	fixed kmer argument bug	Calvin

2013-05-14	use sensing matrix	Calvin