quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2014-03-19	formatting fixes	Calvin Morrison

2014-03-18	FIX ALL THE BUGS	Calvin Morrison

2014-03-13	add basic working quikr functionality for galaxy	Calvin Morrison

2014-03-09	formatting	Calvin Morrison

2014-03-09	formatting changes	Calvin Morrison

2014-03-09	quikr too	Calvin Morrison

2014-03-09	work towards fix	Calvin Morrison

2014-03-09	remove debug	Calvin Morrison

2014-03-06	UNVERIFIED but progress on converting quikr.m to dna-utils	Calvin Morrison

2014-03-06	add basename header'	Calvin Morrison

2014-03-06	use basename in otu headers	Calvin Morrison

2014-03-06	input-filelist	Calvin Morrison

2014-03-06	fix spacing	Calvin Morrison

2014-03-05	fix whitespace to tabs, also add functionalty of reading from file instead ↵	Calvin Morrison
	of reading from directiory
2014-03-05	don't add one, do sequences on a seperate printf	Calvin Morrison

2014-03-05	add sorted matrix for much faster rarity	Calvin Morrison

2014-03-04	fix all warnings and that weird bug	Calvin Morrison

2014-03-04	fix warnings	Calvin Morrison

2013-11-26	some spacing changes	Calvin Morrison

2013-11-26	working single threaded multifasta with rarity	Calvin Morrison

2013-11-13	remove nbc:	Calvin Morrison

2013-11-07	add quikr.h	Calvin Morrison

2013-11-07	remove debugging	Calvin Morrison

2013-11-07	update to work with kmer rarity	Calvin Morrison

2013-11-07	don't cast the return of calloc	Calvin Morrison

2013-11-07	fix memleak	Calvin Morrison

2013-10-31	say failname on fail	Calvin Morrison

2013-10-31	fix variable	Calvin Morrison

2013-10-31	remove all references to sensing-fasta	Calvin Morrison

2013-10-31	add test.fa	Calvin Morrison

2013-10-31	inital test system in place	Calvin Morrison

2013-10-31	finish up removing OCaml Code and general code refactoring	Calvin Morrison

2013-10-31	fix memset	Calvin Morrison

2013-10-31	formatting changes for quikr	Calvin Morrison

2013-10-31	return 0 instead of exit_failure in count_sequences, and remove the newline ↵	Calvin Morrison
	from our header
2013-10-31	exit if no sequences	Calvin Morrison

2013-10-31	fix a bug so we only read when the length is greater han the kmer	Calvin Morrison

2013-10-29	remove the fasta file requirement for multifasta, and no longer parse ↵	Calvin Morrison
	headers (we already do)
2013-10-29	initial commit of multifasta_to_otu.c working with new format	Calvin Morrison

2013-10-29	update tpyes for quikr_train.c	Calvin Morrison

2013-10-29	update types for quikr_functions	Calvin Morrison

2013-10-29	update types and check malloc	Calvin Morrison

2013-10-29	append variables in makefile to reduce redundancy	Calvin Morrison

2013-10-29	use type in memset, add +1 to our matrix width	Calvin Morrison

2013-10-29	update errors from load_sensing_matrix	Calvin Morrison

2013-10-29	update quikr to work with internally parsed sensing matrix	Calvin Morrison

2013-10-29	update header	Calvin Morrison

2013-10-29	fix memset in quikr_train as weel	Calvin Morrison

2013-10-29	Fix a nasty bug in kmer-counting code	Calvin Morrison
	Memset of course does not deal properly with the unsigned long long type so we need to compensate by doing sizeof(unsigned long long) * width to fix the issue
2013-10-28	update kmer utils	Calvin Morrison