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2013-10-31fix a bug so we only read when the length is greater han the kmerCalvin Morrison
2013-10-29remove the fasta file requirement for multifasta, and no longer parse headers...Calvin Morrison
2013-10-29initial commit of multifasta_to_otu.c working with new formatCalvin Morrison
2013-10-29update tpyes for quikr_train.cCalvin Morrison
2013-10-29update types for quikr_functionsCalvin Morrison
2013-10-29update types and check mallocCalvin Morrison
2013-10-29append variables in makefile to reduce redundancyCalvin Morrison
2013-10-29use type in memset, add +1 to our matrix widthCalvin Morrison
2013-10-29update errors from load_sensing_matrixCalvin Morrison
2013-10-29update quikr to work with internally parsed sensing matrixCalvin Morrison
2013-10-29update headerCalvin Morrison
2013-10-29fix memset in quikr_train as weelCalvin Morrison
2013-10-29Fix a nasty bug in kmer-counting codeCalvin Morrison
2013-10-28update kmer utilsCalvin Morrison
2013-10-28New sensing matrix formatCalvin Morrison
2013-10-28update Makefile to be more sane and use targets correctlyCalvin Morrison
2013-10-28Update quikr_functions to read our sensing formatCalvin Morrison
2013-10-18add kmercounting code from dna-utils. update our make file to support debuggi...Calvin Morrison
2013-09-05last fixes for 1.0.4v1.0.4Calvin Morrison
2013-09-05bump to version v1.0.4Calvin Morrison
2013-09-05Remove debugging versionCalvin Morrison
2013-08-29parse -h and --help and print out the help messageCalvin Morrison
2013-08-16Merge branch 'master' of github.com:mutantturkey/quikrCalvin Morrison
2013-08-16remove unused caseCalvin Morrison
2013-06-13use readdir and #omp criticalv1.0.3Calvin
2013-06-12update multifasta pathsCalvin
2013-06-12fix caseCalvin
2013-06-12fix missing commaCalvin
2013-06-12add --version and -VCalvin
2013-06-12use larger size for count_commmand, remove extra quotes, and fix a broken che...Calvin Morrison
2013-06-12Matlab: move multifasta2otu into the main quikr folderCalvin Morrison
2013-06-11Merge branch 'master' of github.com:mutantturkey/quikrCalvin
2013-06-11finally push this patch to fix the lack of an endCalvin
2013-06-11remove fileCalvin Morrison
2013-06-11remove extra wordCalvin
2013-06-11updated functions with longCalvin
2013-06-11Merge branch 'master' of github.com:EESI/quikrCalvin
2013-06-11use int64_t for NNLS to avoid overflow issuesCalvin
2013-06-11small edits to man pageCalvin
2013-06-11use longs instead of ints, fix a mistake in the --helpCalvin
2013-06-10finish gzip decoding, YOU MUST retrain your apiCalvin
2013-06-10native zlib decoding for quikr/multifasta, was done earlier but never commite...Calvin
2013-06-10remove unused variableCalvin
2013-06-07quikrCustomTranied was not using the specified kmer. Use the correct kmer and...Calvin Morrison
2013-06-07free getline's callsCalvin Morrison
2013-06-07updated help text and manpagesCalvin
2013-06-06fixed a malloc error, and fixed some stringsCalvin
2013-05-28modified quikrTrain.m to not depend on a mer file, instead use the generate_k...Calvin
2013-05-28removed filesCalvin
2013-05-28removed unused nbc codeCalvin
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