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AgeCommit message (Expand)Author
2013-05-15removed the bsd licenseCalvin
2013-05-15added file checking for multifasta_to_otuCalvin
2013-05-15add some error checkingCalvin
2013-05-15cleanup kmer/lambda default valuesCalvin
2013-05-15add -d flag for debugging so verbose doesn't take longer, use generate_kmers ...Calvin
2013-05-14release1.0Calvin
2013-05-14add some documentationCalvin
2013-05-14delete spurious printCalvin
2013-05-14fixed kmer argument bugCalvin
2013-05-14use sensing matrixCalvin
2013-05-14remove generate kmers from quikrCalvin
2013-05-14have matlab use global executablesCalvin
2013-05-14generate kmers should stand aloneCalvin
2013-05-14remove probabilties by readCalvin
2013-05-10don't use an output directory, and use basename's for the OTU_tableCalvin
2013-05-03multifasta now reads .fa and fasta file sonlyCalvin
2013-05-03modified command line argumentsCalvin
2013-05-03use a default kmer size of sixCalvin
2013-05-03updated documentation , added multi_gg_final.mCalvin
2013-05-03added a contributorCalvin
2013-05-03do some very basic error checking on generate_kmersCalvin
2013-05-03added nbc classifier sourceCalvin
2013-03-26add / when reading back in, and sort our input listCalvin
2013-03-26added / to output file nameCalvin
2013-03-18use env to find pythonCalvin
2013-03-18Merge remote-tracking branch 'origin/master'Calvin
2013-03-18don't try and force 2.7, it might not workCalvin
2013-03-18remove checking, seems like the sml code isn't returning sane valuesmutantturkey
2013-03-16add return code checkingmutantturkey
2013-03-16use is_compressedmutantturkey
2013-03-16we don't need a kmer file anymore :-)mutantturkey
2013-03-15eliminated the need for Nmers.txt:-)Calvin
2013-03-15delete binariesCalvin
2013-03-15nbc addedCalvin
2013-03-15specify python2.7Calvin
2013-03-15specify python 2.7 in multifastaCalvin
2013-03-15updated multifasta_to_otu to is_compressedCalvin
2013-03-14formatting fixes and renamed isCompressed to is_compressedCalvin
2013-03-14fix automatically creating output directoryCalvin
2013-03-14fix multifasta_to_otu to use proper function names... need to get some automa...Calvin
2013-03-14fixed an incorrect namespaceCalvin
2013-03-14get rid of OS checks for count, assume it is called count-kmersCalvin
2013-03-14re-add the kmer filename checKCalvin
2013-03-13fix bad old commitCalvin
2013-03-13added setup.py for python quikr moduleCalvin
2013-03-12removed multifasta's py extension, modified the --help argument output for q...Calvin
2013-03-11move python stuff to python directoryCalvin
2013-03-11adding matlab codeCalvin
2013-03-08moving some stuffCalvin
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