aboutsummaryrefslogtreecommitdiff
path: root/src
AgeCommit message (Collapse)Author
2014-03-19rarity argument support and documentationCalvin Morrison
2014-03-19add nonworking multifasta to galaxyCalvin Morrison
2014-03-19re-organize quikr.c to match multifasta a bit moreCalvin Morrison
2014-03-19add OMP flagCalvin Morrison
2014-03-19format line endingCalvin Morrison
2014-03-19seperate function for getting a rare valueCalvin Morrison
2014-03-19formatting fixesCalvin Morrison
2014-03-18FIX ALL THE BUGSCalvin Morrison
2014-03-13add basic working quikr functionality for galaxyCalvin Morrison
2014-03-09formattingCalvin Morrison
2014-03-09formatting changesCalvin Morrison
2014-03-09quikr tooCalvin Morrison
2014-03-09work towards fixCalvin Morrison
2014-03-09remove debugCalvin Morrison
2014-03-06UNVERIFIED but progress on converting quikr.m to dna-utilsCalvin Morrison
2014-03-06add basename header'Calvin Morrison
2014-03-06use basename in otu headersCalvin Morrison
2014-03-06input-filelistCalvin Morrison
2014-03-06fix spacingCalvin Morrison
2014-03-05fix whitespace to tabs, also add functionalty of reading from file instead ↵Calvin Morrison
of reading from directiory
2014-03-05don't add one, do sequences on a seperate printfCalvin Morrison
2014-03-05 add sorted matrix for much faster rarityCalvin Morrison
2014-03-04fix all warnings and that weird bugCalvin Morrison
2014-03-04fix warningsCalvin Morrison
2013-11-26some spacing changesCalvin Morrison
2013-11-26working single threaded multifasta with rarityCalvin Morrison
2013-11-13remove nbc:Calvin Morrison
2013-11-07add quikr.hCalvin Morrison
2013-11-07remove debuggingCalvin Morrison
2013-11-07update to work with kmer rarityCalvin Morrison
2013-11-07 don't cast the return of callocCalvin Morrison
2013-11-07fix memleakCalvin Morrison
2013-10-31say failname on failCalvin Morrison
2013-10-31fix variableCalvin Morrison
2013-10-31remove all references to sensing-fastaCalvin Morrison
2013-10-31add test.faCalvin Morrison
2013-10-31inital test system in placeCalvin Morrison
2013-10-31finish up removing OCaml Code and general code refactoringCalvin Morrison
2013-10-31fix memsetCalvin Morrison
2013-10-31formatting changes for quikrCalvin Morrison
2013-10-31return 0 instead of exit_failure in count_sequences, and remove the newline ↵Calvin Morrison
from our header
2013-10-31exit if no sequencesCalvin Morrison
2013-10-31fix a bug so we only read when the length is greater han the kmerCalvin Morrison
2013-10-29remove the fasta file requirement for multifasta, and no longer parse ↵Calvin Morrison
headers (we already do)
2013-10-29initial commit of multifasta_to_otu.c working with new formatCalvin Morrison
2013-10-29update tpyes for quikr_train.cCalvin Morrison
2013-10-29update types for quikr_functionsCalvin Morrison
2013-10-29update types and check mallocCalvin Morrison
2013-10-29append variables in makefile to reduce redundancyCalvin Morrison
2013-10-29use type in memset, add +1 to our matrix widthCalvin Morrison
generated by cgit v1.2.3 (git 2.39.1) at 2024-12-26 19:13:10 +0000