quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2013-02-27	Write the comments in for the work to be done	Calvin
	Comment first, write code later! Also I fixed an erroneous space that really didn't need to be there. Laid down the import for biopyton. Created the basic iteration through our fasta files and added loading of fasta file titles through biopython
2013-02-27	Update multifasta_to_otu.py for new quikr function	Calvin
	* Removed an old comment from the quikr function * Load the trained matrix from multifasta main. * This will reduce load times as we only need to call it once
2013-02-27	* add helper quikr_load_trained_from_file to load file	Calvin
	* change quikr to load a numpy matrix, not file
2013-02-26	added multifasta.m and documenting it	Calvin

2013-02-26	changes	Calvin

2013-02-26	merge resolution	Calvin

2013-02-26	some upodates	Calvin

2013-02-26	iteratively loop through	mutantturkey

2013-02-25	fixed syntax mistake	Calvin

2013-02-25	initial commit, playing around with threading	mutantturkey

2013-02-22	fix example in header, fix weird character in args, remove incorrect dtype ↵	Calvin
	from previous commit
2013-02-22	changed argument help messages	Calvin

2013-02-22	quikr now works! the numbers are almost identical to matlab (is 6th digit ↵	mutantturkey
	precision an issue?). use a vflip and don't transpose and it works
2013-02-22	update readme with link	mutantturkey

2013-02-22	require more arguments since people will always be required to have certain ↵	mutantturkey
	ones, simplfies our checks, also remove all out print shapes
2013-02-22	rotate matricies	Calvin

2013-02-22	Fixed quikr to actually work, insert headers of 1's and 0's into our arrays, ↵	Calvin
	fix a spelling error, writhout our solution vector in a csv formatted as floats
2013-02-19	added argument to accept output (solution vector) into a csv	mutantturkey

2013-02-19	saving changes to work remotely	Calvin

2013-02-18	set the input matrix properly	Calvin

2013-02-15	tried to run it, fixed ftr several times	Calvin

2013-02-15	add correct flag	Calvin

2013-02-15	added argparse arguments	Calvin

2013-02-15	readme	mutantturkey

2013-02-15	added some comments	mutantturkey

2013-02-14	added arg parsing, and fixed a few errors, still have not tried to run code	Calvin

2013-02-14	quikr and quikr_train	Calvin