quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2013-06-10	native zlib decoding for quikr/multifasta, was done earlier but never ↵	Calvin
	commited for some reason
2013-06-10	remove unused variable	Calvin

2013-06-07	quikrCustomTranied was not using the specified kmer. Use the correct kmer ↵	Calvin Morrison
	and also rename rws and clmns to rows and columns respectively :
2013-06-07	free getline's calls	Calvin Morrison

2013-06-07	updated help text and manpages	Calvin

2013-06-06	updated Changelog	Calvin

2013-06-06	fixed a malloc error, and fixed some strings	Calvin

2013-06-05	addd mlton as dependency	Calvin

2013-06-05	update links	Calvin

2013-05-28	Added not about generate_kmers	Calvin Morrison
	Added notes to the matlab documentation about the generate kmers requirement.
2013-05-28	Updated README for github	Calvin Morrison
	Link properly to our documentation in github, as well as LICENSE file.
2013-05-28	remove 6mers.txt	Calvin

2013-05-28	modified quikrTrain.m to not depend on a mer file, instead use the ↵	Calvin
	generate_kmers
2013-05-28	removed files	Calvin

2013-05-28	removed unused nbc code	Calvin

2013-05-28	added license	Calvin

2013-05-20	use nnn instead on n*n for nnls	Calvin

2013-05-20	new release notesv1.0.2	Calvin

2013-05-20	updated documentation strings, add man page to be installed globally	Calvin

2013-05-19	native gzip decoding	Calvin Morrison

2013-05-16	new changelogv1.0.1	Calvin

2013-05-16	update readme	Calvin

2013-05-16	used newlines in readme for clarity, update our references to the ../../../data/	Calvin

2013-05-15	python: add some more descriptive comments, use lamb instead of default lamb	Calvin

2013-05-15	removed extra whitespace	Calvin

2013-05-15	move the readme	Calvin

2013-05-15	removed the bsd license	Calvin

2013-05-15	fixes for readme.markdown	Calvin

2013-05-15	use consistent headers	Calvin

2013-05-15	remove extra spaces	Calvin

2013-05-15	fix a move	Calvin

2013-05-15	rename readme	Calvin

2013-05-15	change links to work for github	Calvin

2013-05-15	added file checking for multifasta_to_otu	Calvin

2013-05-15	add some error checking	Calvin

2013-05-15	cleanup kmer/lambda default values	Calvin

2013-05-15	add -d flag for debugging so verbose doesn't take longer, use generate_kmers ↵	Calvin
	instead of a hacky awk
2013-05-14	release1.0	Calvin

2013-05-14	updated docs	Calvin

2013-05-14	update makefile to include c	Calvin

2013-05-14	add some documentation	Calvin

2013-05-14	delete spurious print	Calvin

2013-05-14	fixed kmer argument bug	Calvin

2013-05-14	use sensing matrix	Calvin

2013-05-14	add readme	Calvin

2013-05-14	remove generate kmers from quikr	Calvin

2013-05-14	have matlab use global executables	Calvin

2013-05-14	generate kmers should stand alone	Calvin

2013-05-14	remove probabilties by read	Calvin

2013-05-10	don't use an output directory, and use basename's for the OTU_table	Calvin