quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2013-05-14	update makefile to include c	Calvin

2013-05-14	add some documentation	Calvin

2013-05-14	delete spurious print	Calvin

2013-05-14	fixed kmer argument bug	Calvin

2013-05-14	use sensing matrix	Calvin

2013-05-14	add readme	Calvin

2013-05-14	remove generate kmers from quikr	Calvin

2013-05-14	have matlab use global executables	Calvin

2013-05-14	generate kmers should stand alone	Calvin

2013-05-14	remove probabilties by read	Calvin

2013-05-10	don't use an output directory, and use basename's for the OTU_table	Calvin

2013-05-03	multifasta now reads .fa and fasta file sonly	Calvin

2013-05-03	modified command line arguments	Calvin

2013-05-03	use a default kmer size of six	Calvin

2013-05-03	updated documentation , added multi_gg_final.m	Calvin

2013-05-03	added a contributor	Calvin

2013-05-03	do some very basic error checking on generate_kmers	Calvin

2013-05-03	added updated cli documentation	Calvin

2013-05-03	added nbc classifier source	Calvin

2013-03-26	add / when reading back in, and sort our input list	Calvin

2013-03-26	added / to output file name	Calvin

2013-03-18	use env to find python	Calvin

2013-03-18	Merge remote-tracking branch 'origin/master'	Calvin

2013-03-18	don't try and force 2.7, it might not work	Calvin

2013-03-18	remove checking, seems like the sml code isn't returning sane values	mutantturkey

2013-03-16	add return code checking	mutantturkey

2013-03-16	use is_compressed	mutantturkey

2013-03-16	we don't need a kmer file anymore :-)	mutantturkey

2013-03-15	eliminated the need for Nmers.txt:-)	Calvin

2013-03-15	added generate_kmers to the makefile	Calvin

2013-03-15	delete binaries	Calvin

2013-03-15	nbc added	Calvin

2013-03-15	specify python2.7	Calvin

2013-03-15	specify python 2.7 in multifasta	Calvin

2013-03-15	updated multifasta_to_otu to is_compressed	Calvin

2013-03-14	formatting fixes and renamed isCompressed to is_compressed	Calvin

2013-03-14	fix automatically creating output directory	Calvin

2013-03-14	fix multifasta_to_otu to use proper function names... need to get some ↵	Calvin
	automatic unit testing going or something
2013-03-14	fixed an incorrect namespace	Calvin

2013-03-14	get rid of OS checks for count, assume it is called count-kmers	Calvin

2013-03-14	re-add the kmer filename checK	Calvin

2013-03-13	fix bad old commit	Calvin

2013-03-13	added multi_fasta_otu to cli.markdown	Calvin

2013-03-13	added matlab markdown and edited cli	Calvin

2013-03-13	added setup.py for python quikr module	Calvin

2013-03-13	updated makefile to install nbc properly and python properly.	Calvin

2013-03-12	initial commit of some documentation	Calvin

2013-03-12	removed multifasta's py extension, modified the --help argument output for ↵	Calvin
	quikr_train
2013-03-11	removed documented matlab, add bare makefile	Calvin

2013-03-11	move python stuff to python directory	Calvin