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AgeCommit message (Expand)Author
2013-05-14generate kmers should stand aloneCalvin
2013-05-14remove probabilties by readCalvin
2013-05-10don't use an output directory, and use basename's for the OTU_tableCalvin
2013-05-03multifasta now reads .fa and fasta file sonlyCalvin
2013-05-03modified command line argumentsCalvin
2013-05-03use a default kmer size of sixCalvin
2013-05-03updated documentation , added multi_gg_final.mCalvin
2013-05-03added a contributorCalvin
2013-05-03do some very basic error checking on generate_kmersCalvin
2013-05-03added updated cli documentationCalvin
2013-05-03added nbc classifier sourceCalvin
2013-03-26add / when reading back in, and sort our input listCalvin
2013-03-26added / to output file nameCalvin
2013-03-18use env to find pythonCalvin
2013-03-18Merge remote-tracking branch 'origin/master'Calvin
2013-03-18don't try and force 2.7, it might not workCalvin
2013-03-18remove checking, seems like the sml code isn't returning sane valuesmutantturkey
2013-03-16add return code checkingmutantturkey
2013-03-16use is_compressedmutantturkey
2013-03-16we don't need a kmer file anymore :-)mutantturkey
2013-03-15eliminated the need for Nmers.txt:-)Calvin
2013-03-15added generate_kmers to the makefileCalvin
2013-03-15delete binariesCalvin
2013-03-15nbc addedCalvin
2013-03-15specify python2.7Calvin
2013-03-15specify python 2.7 in multifastaCalvin
2013-03-15updated multifasta_to_otu to is_compressedCalvin
2013-03-14formatting fixes and renamed isCompressed to is_compressedCalvin
2013-03-14fix automatically creating output directoryCalvin
2013-03-14fix multifasta_to_otu to use proper function names... need to get some automa...Calvin
2013-03-14fixed an incorrect namespaceCalvin
2013-03-14get rid of OS checks for count, assume it is called count-kmersCalvin
2013-03-14re-add the kmer filename checKCalvin
2013-03-13fix bad old commitCalvin
2013-03-13added multi_fasta_otu to cli.markdownCalvin
2013-03-13added matlab markdown and edited cliCalvin
2013-03-13added setup.py for python quikr moduleCalvin
2013-03-13updated makefile to install nbc properly and python properly.Calvin
2013-03-12initial commit of some documentationCalvin
2013-03-12removed multifasta's py extension, modified the --help argument output for q...Calvin
2013-03-11removed documented matlab, add bare makefileCalvin
2013-03-11move python stuff to python directoryCalvin
2013-03-11adding matlab codeCalvin
2013-03-08moving some stuffCalvin
2013-03-08fix quikr_train to work with updated quikr modulemutantturkey
2013-03-08convert into a module, rename out functions so all quikr functions are within...mutantturkey
2013-03-08fix quikrmutantturkey
2013-03-08fix multifasta_to_otumutantturkey
2013-03-07starting to modularizeCalvin
2013-03-07minor formatting cleanupCalvin
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