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2013-06-11Merge branch 'master' of github.com:EESI/quikrCalvin
2013-06-11use int64_t for NNLS to avoid overflow issuesCalvin
2013-06-11small edits to man pageCalvin
2013-06-11use longs instead of ints, fix a mistake in the --helpCalvin
2013-06-10finish gzip decoding, YOU MUST retrain your apiCalvin
2013-06-10native zlib decoding for quikr/multifasta, was done earlier but never ↵Calvin
commited for some reason
2013-06-10remove unused variableCalvin
2013-06-07quikrCustomTranied was not using the specified kmer. Use the correct kmer ↵Calvin Morrison
and also rename rws and clmns to rows and columns respectively :
2013-06-07free getline's callsCalvin Morrison
2013-06-07updated help text and manpagesCalvin
2013-06-06updated ChangelogCalvin
2013-06-06fixed a malloc error, and fixed some stringsCalvin
2013-06-05addd mlton as dependencyCalvin
2013-06-05update linksCalvin
2013-05-28Added not about generate_kmersCalvin Morrison
Added notes to the matlab documentation about the generate kmers requirement.
2013-05-28Updated README for githubCalvin Morrison
Link properly to our documentation in github, as well as LICENSE file.
2013-05-28remove 6mers.txtCalvin
2013-05-28modified quikrTrain.m to not depend on a mer file, instead use the ↵Calvin
generate_kmers
2013-05-28removed filesCalvin
2013-05-28removed unused nbc codeCalvin
2013-05-28added licenseCalvin
2013-05-20use n*n*n instead on n*n for nnlsCalvin
2013-05-20new release notesv1.0.2Calvin
2013-05-20updated documentation strings, add man page to be installed globallyCalvin
2013-05-19native gzip decodingCalvin Morrison
2013-05-16new changelogv1.0.1Calvin
2013-05-16update readmeCalvin
2013-05-16used newlines in readme for clarity, update our references to the ../../../data/Calvin
2013-05-15python: add some more descriptive comments, use lamb instead of default lambCalvin
2013-05-15removed extra whitespaceCalvin
2013-05-15move the readmeCalvin
2013-05-15removed the bsd licenseCalvin
2013-05-15fixes for readme.markdownCalvin
2013-05-15use consistent headersCalvin
2013-05-15remove extra spacesCalvin
2013-05-15fix a moveCalvin
2013-05-15rename readmeCalvin
2013-05-15change links to work for githubCalvin
2013-05-15added file checking for multifasta_to_otuCalvin
2013-05-15add some error checkingCalvin
2013-05-15cleanup kmer/lambda default valuesCalvin
2013-05-15add -d flag for debugging so verbose doesn't take longer, use generate_kmers ↵Calvin
instead of a hacky awk
2013-05-14release1.0Calvin
2013-05-14updated docsCalvin
2013-05-14update makefile to include cCalvin
2013-05-14add some documentationCalvin
2013-05-14delete spurious printCalvin
2013-05-14fixed kmer argument bugCalvin
2013-05-14use sensing matrixCalvin
2013-05-14add readmeCalvin
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