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2013-08-30Update cli.markdownCalvin Morrison
Fix markdown formatting, and add some details about the pre-requisites for multifasta
2013-08-20Don't escape _'sCalvin Morrison
2013-08-16Merge branch 'master' of github.com:EESI/quikrCalvin Morrison
2013-08-16Merge branch 'master' of github.com:mutantturkey/quikrCalvin Morrison
2013-08-16remove unused caseCalvin Morrison
2013-08-12Merge pull request #1 from gailrosen/patch-1Calvin Morrison
Update matlab.markdown
2013-08-12Update matlab.markdowngailrosen
The other version was not properly viewable. Now it is.
2013-06-13use readdir and #omp criticalv1.0.3Calvin
2013-06-12update multifasta pathsCalvin
2013-06-12fix caseCalvin
2013-06-12update documention to include current argumentsCalvin
2013-06-12fix missing commaCalvin
2013-06-12update version to v1.0.3Calvin
2013-06-12add --version and -VCalvin
2013-06-12use larger size for count_commmand, remove extra quotes, and fix a broken ↵Calvin Morrison
check in multifasta2otu
2013-06-12Matlab: move multifasta2otu into the main quikr folderCalvin Morrison
2013-06-11Merge branch 'master' of github.com:EESI/quikrCalvin
2013-06-11Merge branch 'master' of github.com:mutantturkey/quikrCalvin
2013-06-11finally push this patch to fix the lack of an endCalvin
2013-06-11make documentation more consistentCalvin Morrison
2013-06-11updated changelogCalvin Morrison
2013-06-11remove fileCalvin Morrison
2013-06-11Merge branch 'master' of github.com:mutantturkey/quikrCalvin
2013-06-11cli.markdown modifications for github formattingCalvin Morrison
4 spaces for function --help 4 spaces for QIIME procedure remove extra backslash
2013-06-11cli.markdown modificationsCalvin Morrison
- removed reference to a download page that doesn't exist - fixed typo
2013-06-11remove extra wordCalvin
2013-06-11updated functions with longCalvin
2013-06-11Merge branch 'master' of github.com:EESI/quikrCalvin
2013-06-11use int64_t for NNLS to avoid overflow issuesCalvin
2013-06-11small edits to man pageCalvin
2013-06-11use longs instead of ints, fix a mistake in the --helpCalvin
2013-06-10finish gzip decoding, YOU MUST retrain your apiCalvin
2013-06-10native zlib decoding for quikr/multifasta, was done earlier but never ↵Calvin
commited for some reason
2013-06-10remove unused variableCalvin
2013-06-07quikrCustomTranied was not using the specified kmer. Use the correct kmer ↵Calvin Morrison
and also rename rws and clmns to rows and columns respectively :
2013-06-07free getline's callsCalvin Morrison
2013-06-07updated help text and manpagesCalvin
2013-06-06updated ChangelogCalvin
2013-06-06fixed a malloc error, and fixed some stringsCalvin
2013-06-05addd mlton as dependencyCalvin
2013-06-05update linksCalvin
2013-05-28Added not about generate_kmersCalvin Morrison
Added notes to the matlab documentation about the generate kmers requirement.
2013-05-28Updated README for githubCalvin Morrison
Link properly to our documentation in github, as well as LICENSE file.
2013-05-28remove 6mers.txtCalvin
2013-05-28modified quikrTrain.m to not depend on a mer file, instead use the ↵Calvin
generate_kmers
2013-05-28removed filesCalvin
2013-05-28removed unused nbc codeCalvin
2013-05-28added licenseCalvin
2013-05-20use n*n*n instead on n*n for nnlsCalvin
2013-05-20new release notesv1.0.2Calvin
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