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Quikr - a bio classifier based on NNLS
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Author
2013-03-05
Added generate_kmers.py
Calvin
2013-02-28
use the load from file instead of calling it directly, should work now.
Calvin
2013-02-27
working on the iterators
Calvin
2013-02-27
Create a dictionary of our trained matrix id's
Calvin
2013-02-27
Write the comments in for the work to be done
Calvin
2013-02-27
Update multifasta_to_otu.py for new quikr function
Calvin
2013-02-27
* add helper quikr_load_trained_from_file to load file
Calvin
2013-02-26
added multifasta.m and documenting it
Calvin
2013-02-26
changes
Calvin
2013-02-26
merge resolution
Calvin
2013-02-26
some upodates
Calvin
2013-02-26
iteratively loop through
mutantturkey
2013-02-25
fixed syntax mistake
Calvin
2013-02-25
initial commit, playing around with threading
mutantturkey
2013-02-22
fix example in header, fix weird character in args, remove incorrect dtype fr...
Calvin
2013-02-22
changed argument help messages
Calvin
2013-02-22
quikr now works! the numbers are almost identical to matlab (is 6th digit pre...
mutantturkey
2013-02-22
update readme with link
mutantturkey
2013-02-22
require more arguments since people will always be required to have certain o...
mutantturkey
2013-02-22
rotate matricies
Calvin
2013-02-22
Fixed quikr to actually work, insert headers of 1's and 0's into our arrays, ...
Calvin
2013-02-19
added argument to accept output (solution vector) into a csv
mutantturkey
2013-02-19
saving changes to work remotely
Calvin
2013-02-18
set the input matrix properly
Calvin
2013-02-15
tried to run it, fixed ftr several times
Calvin
2013-02-15
add correct flag
Calvin
2013-02-15
added argparse arguments
Calvin
2013-02-15
readme
mutantturkey
2013-02-15
added some comments
mutantturkey
2013-02-14
added arg parsing, and fixed a few errors, still have not tried to run code
Calvin
2013-02-14
quikr and quikr_train
Calvin