summaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2013-02-27Update multifasta_to_otu.py for new quikr functionCalvin
* Removed an old comment from the quikr function * Load the trained matrix from multifasta main. * This will reduce load times as we only need to call it once
2013-02-27* add helper quikr_load_trained_from_file to load fileCalvin
* change quikr to load a numpy matrix, not file
2013-02-26added multifasta.m and documenting itCalvin
2013-02-26changesCalvin
2013-02-26merge resolutionCalvin
2013-02-26some upodatesCalvin
2013-02-26iteratively loop throughmutantturkey
2013-02-25fixed syntax mistakeCalvin
2013-02-25initial commit, playing around with threadingmutantturkey
2013-02-22fix example in header, fix weird character in args, remove incorrect dtype ↵Calvin
from previous commit
2013-02-22changed argument help messagesCalvin
2013-02-22quikr now works! the numbers are almost identical to matlab (is 6th digit ↵mutantturkey
precision an issue?). use a vflip and don't transpose and it works
2013-02-22update readme with linkmutantturkey
2013-02-22require more arguments since people will always be required to have certain ↵mutantturkey
ones, simplfies our checks, also remove all out print shapes
2013-02-22rotate matriciesCalvin
2013-02-22Fixed quikr to actually work, insert headers of 1's and 0's into our arrays, ↵Calvin
fix a spelling error, writhout our solution vector in a csv formatted as floats
2013-02-19added argument to accept output (solution vector) into a csvmutantturkey
2013-02-19saving changes to work remotelyCalvin
2013-02-18set the input matrix properlyCalvin
2013-02-15tried to run it, fixed ftr several timesCalvin
2013-02-15add correct flagCalvin
2013-02-15added argparse argumentsCalvin
2013-02-15readmemutantturkey
2013-02-15added some commentsmutantturkey
2013-02-14added arg parsing, and fixed a few errors, still have not tried to run codeCalvin
2013-02-14quikr and quikr_trainCalvin