quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Expand)	Author
2013-03-16	add return code checking	mutantturkey
2013-03-16	use is_compressed	mutantturkey
2013-03-16	we don't need a kmer file anymore :-)	mutantturkey
2013-03-15	eliminated the need for Nmers.txt:-)	Calvin
2013-03-15	added generate_kmers to the makefile	Calvin
2013-03-15	delete binaries	Calvin
2013-03-15	nbc added	Calvin
2013-03-15	specify python2.7	Calvin
2013-03-15	specify python 2.7 in multifasta	Calvin
2013-03-15	updated multifasta_to_otu to is_compressed	Calvin
2013-03-14	formatting fixes and renamed isCompressed to is_compressed	Calvin
2013-03-14	fix automatically creating output directory	Calvin
2013-03-14	fix multifasta_to_otu to use proper function names... need to get some automa...	Calvin
2013-03-14	fixed an incorrect namespace	Calvin
2013-03-14	get rid of OS checks for count, assume it is called count-kmers	Calvin
2013-03-14	re-add the kmer filename checK	Calvin
2013-03-13	fix bad old commit	Calvin
2013-03-13	added multi_fasta_otu to cli.markdown	Calvin
2013-03-13	added matlab markdown and edited cli	Calvin
2013-03-13	added setup.py for python quikr module	Calvin
2013-03-13	updated makefile to install nbc properly and python properly.	Calvin
2013-03-12	initial commit of some documentation	Calvin
2013-03-12	removed multifasta's py extension, modified the --help argument output for q...	Calvin
2013-03-11	removed documented matlab, add bare makefile	Calvin
2013-03-11	move python stuff to python directory	Calvin
2013-03-11	adding matlab code	Calvin
2013-03-08	moving some stuff	Calvin
2013-03-08	fix quikr_train to work with updated quikr module	mutantturkey
2013-03-08	convert into a module, rename out functions so all quikr functions are within...	mutantturkey
2013-03-08	fix quikr	mutantturkey
2013-03-08	fix multifasta_to_otu	mutantturkey
2013-03-07	starting to modularize	Calvin
2013-03-07	minor formatting cleanup	Calvin
2013-03-07	multifasta_to_otu.py support for compression	Calvin
2013-03-07	added gzip compression support	Calvin
2013-03-07	Check if file is compressed	Calvin
2013-03-06	removed debugging statements	Calvin
2013-03-06	do the matrix rotations and manipulations in quikr_train instead of quikr	Calvin
2013-03-06	Cleanups and refactoring	Calvin
2013-03-06	fixed index	Calvin
2013-03-06	formatting cleanups, removed unused import, deleted unused lines	Calvin
2013-03-05	Added OTU table output and grep parsing	Calvin
2013-03-05	simplify generate_kmers.py	Calvin
2013-03-05	Added generate_kmers.py	Calvin
2013-02-28	use the load from file instead of calling it directly, should work now.	Calvin
2013-02-27	working on the iterators	Calvin
2013-02-27	Create a dictionary of our trained matrix id's	Calvin
2013-02-27	Write the comments in for the work to be done	Calvin
2013-02-27	Update multifasta_to_otu.py for new quikr function	Calvin
2013-02-27	* add helper quikr_load_trained_from_file to load file	Calvin