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AgeCommit message (Expand)Author
2013-03-07minor formatting cleanupCalvin
2013-03-07multifasta_to_otu.py support for compressionCalvin
2013-03-07added gzip compression supportCalvin
2013-03-07Check if file is compressedCalvin
2013-03-06removed debugging statementsCalvin
2013-03-06do the matrix rotations and manipulations in quikr_train instead of quikrCalvin
2013-03-06Cleanups and refactoringCalvin
2013-03-06fixed indexCalvin
2013-03-06formatting cleanups, removed unused import, deleted unused linesCalvin
2013-03-05Added OTU table output and grep parsingCalvin
2013-03-05simplify generate_kmers.pyCalvin
2013-03-05Added generate_kmers.pyCalvin
2013-02-28use the load from file instead of calling it directly, should work now.Calvin
2013-02-27working on the iteratorsCalvin
2013-02-27Create a dictionary of our trained matrix id'sCalvin
2013-02-27Write the comments in for the work to be doneCalvin
2013-02-27Update multifasta_to_otu.py for new quikr functionCalvin
2013-02-27* add helper quikr_load_trained_from_file to load fileCalvin
2013-02-26added multifasta.m and documenting itCalvin
2013-02-26changesCalvin
2013-02-26merge resolutionCalvin
2013-02-26some upodatesCalvin
2013-02-26iteratively loop throughmutantturkey
2013-02-25fixed syntax mistakeCalvin
2013-02-25initial commit, playing around with threadingmutantturkey
2013-02-22fix example in header, fix weird character in args, remove incorrect dtype fr...Calvin
2013-02-22changed argument help messagesCalvin
2013-02-22quikr now works! the numbers are almost identical to matlab (is 6th digit pre...mutantturkey
2013-02-22update readme with linkmutantturkey
2013-02-22require more arguments since people will always be required to have certain o...mutantturkey
2013-02-22rotate matriciesCalvin
2013-02-22Fixed quikr to actually work, insert headers of 1's and 0's into our arrays, ...Calvin
2013-02-19added argument to accept output (solution vector) into a csvmutantturkey
2013-02-19saving changes to work remotelyCalvin
2013-02-18set the input matrix properlyCalvin
2013-02-15tried to run it, fixed ftr several timesCalvin
2013-02-15add correct flagCalvin
2013-02-15added argparse argumentsCalvin
2013-02-15readmemutantturkey
2013-02-15added some commentsmutantturkey
2013-02-14added arg parsing, and fixed a few errors, still have not tried to run codeCalvin
2013-02-14quikr and quikr_trainCalvin