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-rwxr-xr-xsrc/python/quikr.py13
1 files changed, 0 insertions, 13 deletions
diff --git a/src/python/quikr.py b/src/python/quikr.py
index 1bd5667..98cc953 100755
--- a/src/python/quikr.py
+++ b/src/python/quikr.py
@@ -8,19 +8,7 @@ from subprocess import *
import gzip
import itertools
-def generate_kmers(kmer):
- """ generate all possible kmers permutations seperated by newlines
- >>> kmers = generate_kmers(1)
- >>> generate_kmers(2)
-
- param kmer: the desired Mer size
- type kmer: int
- return: Returns a string of kmers seperated by newlines
- rtype: string
- """
-
- return '\n'.join(''.join(x) for x in itertools.product('acgt', repeat=kmer))
def is_compressed(filename):
""" This function checks to see if the file is gzipped
@@ -48,7 +36,6 @@ def is_compressed(filename):
else:
f.close()
return False
-
def train_matrix(input_file_location, kmer):
"""