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-rwxr-xr-xsrc/python/quikr.py8
1 files changed, 4 insertions, 4 deletions
diff --git a/src/python/quikr.py b/src/python/quikr.py
index cb33493..a756e6c 100755
--- a/src/python/quikr.py
+++ b/src/python/quikr.py
@@ -23,10 +23,10 @@ def generate_kmers(kmer):
return '\n'.join(''.join(x) for x in itertools.product('acgt', repeat=kmer))
-def isCompressed(filename):
+def is_compressed(filename):
""" This function checks to see if the file is gzipped
- >>> boolean_value = isCompressed("/path/to/compressed/gzip/file")
+ >>> boolean_value = is_compressed("/path/to/compressed/gzip/file")
>>> print boolean_value
True
@@ -39,7 +39,7 @@ def isCompressed(filename):
try:
f = open(filename, "rb")
except IOError:
- print "Warning: isCompressed could not find " + filename
+ print "Warning: is_compressed could not find " + filename
return False
# The first two bytes of a gzipped file are always '1f 8b'
@@ -71,7 +71,7 @@ def train_matrix(input_file_location, kmer):
def load_trained_matrix_from_file(trained_matrix_location):
""" This is a helper function to load our trained matrix and run quikr """
- if isCompressed(trained_matrix_location):
+ if is_compressed(trained_matrix_location):
trained_matrix_file = gzip.open(trained_matrix_location, "rb")
else:
trained_matrix_file = open(trained_matrix_location, "rb")