diff options
Diffstat (limited to 'src/matlab/multifasta2otu/README')
| -rw-r--r-- | src/matlab/multifasta2otu/README | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/src/matlab/multifasta2otu/README b/src/matlab/multifasta2otu/README index e4bcc2e..05a26c6 100644 --- a/src/matlab/multifasta2otu/README +++ b/src/matlab/multifasta2otu/README @@ -15,8 +15,10 @@ convert_biom.py -i <quikr_otu_table.txt> -o <quikr_otu>.biom --biom_table_type=" (Note: Our code works much better with WEIGHTED Unifrac as opposed to Unweighted.) -Pre-requisites: 1) <quikr_otu_table.txt>, 2) the tree of the database sequences that were used (e.g. -rdp7_mafft.fasttree, gg_94_otus_4feb2011.tre, etc.), and 3) your-defined <qiime_metadata_file.txt> +Pre-requisites: +1. <quikr_otu_table.txt> +2. the tree of the database sequences that were used (e.g. rdp7_mafft.fasttree, gg_94_otus_4feb2011.tre. they are in the data directory) +3. your-defined <qiime_metadata_file.txt> 1. convert_biom.py -i <quikr_otu_table.txt> -o <quikr_otu>.biom --biom_table_type="otu table" 2. beta_diversity.py -i <quikr_otu>.biom -m weighted_unifrac -o beta_div -t <tree file (example: rdp7_mafft.fasttree)> |