diff options
Diffstat (limited to 'src/c/Makefile')
| -rw-r--r-- | src/c/Makefile | 13 |
1 files changed, 7 insertions, 6 deletions
diff --git a/src/c/Makefile b/src/c/Makefile index 1d3581d..0039230 100644 --- a/src/c/Makefile +++ b/src/c/Makefile @@ -1,10 +1,9 @@ VERSION=\"v1.0.4\" UNAME := $(shell uname) +PWD = $(shell pwd) CC = gcc -QUIKR_TRAIN_CFLAGS = -D$(UNAME) -DVERSION=$(VERSION) -MULTIFASTA_CFLAGS = -pthread -L../ -I../ -std=gnu99 -fopenmp -D$(UNAME) -DVERSION=$(VERSION) -QUIKR_CFLAGS = -D$(UNAME) -DVERSION=$(VERSION) -CFLAGS = -Wall -Wextra -lm -lz +MULTIFASTA_CFLAGS = -pthread -L../ -I../ -std=gnu99 -fopenmp +CFLAGS = -Wall -Wextra -lm -lz -D$(UNAME) -DVERSION=$(VERSION) ifndef DEBUG @@ -13,7 +12,7 @@ else CFLAGS += -ggdb3 -O0 endif -all: nnls.o kmer_utils.o quikr_train quikr multifasta_to_otu +all: nnls.o kmer_utils.o quikr_functions.o quikr_train quikr multifasta_to_otu test nnls.o: nnls.c $(CC) -c nnls.c -o nnls.o $(CFLAGS) @@ -26,6 +25,8 @@ multifasta_to_otu: kmer_utils.o nnls.o quikr_functions.o multifasta_to_otu.c quikr_train: kmer_utils.o quikr_functions.o quikr_train.c $(CC) quikr_train.c quikr_functions.o kmer_utils.o -o quikr_train $(CFLAGS) $(QUIKR_TRAIN_CFLAGS) quikr: kmer_utils.o nnls.o quikr_functions.o quikr.c - $(CC) quikr.c quikr_functions.o nnls.o kmer_utils.o -o quikr $(CFLAGS) $(QUIKR_CFLAGS) -I../ + $(CC) quikr.c quikr_functions.o nnls.o kmer_utils.o -o quikr $(CFLAGS) $(QUIKR_CFLAGS) clean: rm -v quikr_train quikr multifasta_to_otu *.o +test: kmer_utils.o nnls.o quikr_functions.o test.c + $(CC) test.c quikr_functions.o nnls.o kmer_utils.o -o test $(CFLAGS) -I$(PWD) |