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Diffstat (limited to 'multifasta_to_otu.py')
| -rwxr-xr-x | multifasta_to_otu.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/multifasta_to_otu.py b/multifasta_to_otu.py index 4a46be6..3e14fcf 100755 --- a/multifasta_to_otu.py +++ b/multifasta_to_otu.py @@ -12,7 +12,6 @@ import platform # our defaults kmer = 6 lamb = 10000 -trained_matrix = "" output_directory = "" input_directory = "" @@ -65,6 +64,9 @@ def main(): if args.kmer is not None: kmer = args.kmer + # Load trained matrix + trained_matrix = np.load(args.trained_matrix); + fasta_list = os.listdir(args.input_directory) pool = Pool(processes=jobs) |