diff options
Diffstat (limited to 'multifasta_to_otu.py')
| -rwxr-xr-x[-rw-r--r--] | multifasta_to_otu.py | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/multifasta_to_otu.py b/multifasta_to_otu.py index 34af060..18ddc35 100644..100755 --- a/multifasta_to_otu.py +++ b/multifasta_to_otu.py @@ -53,9 +53,11 @@ def main(): if args.kmer is not None: kmer = args.kmer - fasta_list = os.listdir(args. - pool = Pool(processes=jobs) - result = pool.map(quikr_call, fasta_list) + fasta_list = os.listdir(args.input_directory) + + for fasta in fasta_list: + quikr_call(fasta) + return 0 def quikr_call(fasta_file): @@ -63,6 +65,6 @@ def quikr_call(fasta_file): np.savetxt(output_directory + os.path.basename(fasta_file), xstar, delimiter=",", fmt="%f") return 0 - if __name__ == "__main__": - sys.exit(main()) +if __name__ == "__main__": + sys.exit(main()) |