diff options
Diffstat (limited to 'doc/python.markdown')
| -rw-r--r-- | doc/python.markdown | 22 | 
1 files changed, 22 insertions, 0 deletions
| diff --git a/doc/python.markdown b/doc/python.markdown new file mode 100644 index 0000000..df086d8 --- /dev/null +++ b/doc/python.markdown @@ -0,0 +1,22 @@ +# Python Documentation # +The python version comes with scripts that can be used like the regular quikr +program, and also a module called quikr so integration with python scripts  +is easier. + +If you  are switching to use the python scripts instead of the regular, you +will need to regenerate your trained databases with the python version of  +quikr\_train. + +## Function documentation ## +If you want to use our quikr module, run help on the module: + +    >>> import quikr +    >>> help(quikr) +## Python Cannot Find XYZ ## + +Ensure that you have Python 2.7, Scipy, Numpy, and BIOpython installed  +and that python is setup correctly. You should be able to do this from a python +prompt without any errors: +    >>> import numpy +    >>> import scipy +    >>> from Bio import SeqIO | 
