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Diffstat (limited to 'doc/cli.markdown')
| -rw-r--r-- | doc/cli.markdown | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/doc/cli.markdown b/doc/cli.markdown index c7f8e11..8d25337 100644 --- a/doc/cli.markdown +++ b/doc/cli.markdown @@ -26,6 +26,9 @@ Quikr returns the estimated frequencies of batcteria present when given a input FASTA file. A default trained matrix will be used if none is supplied You must supply a kmer and default lambda if using a custom trained matrix. +### Usage ### +quikr returns the solution vector as a csv file. + quikr's optional arguments: -f, --fasta, the fasta file sample -o, --output OUTPUT, the output path (csv output) @@ -34,7 +37,7 @@ quikr's optional arguments: -k, --kmer, this specifies which kmer to use (default is 6) -### Troubleshooting ### +# Troubleshooting # If you are having trouble, and these solutions don't work. Please contact the developers with questions and issues. |