diff options
| -rw-r--r-- | src/c/kmer_utils.c | 1 | ||||
| -rw-r--r-- | src/c/quikr_functions.c | 5 |
2 files changed, 3 insertions, 3 deletions
diff --git a/src/c/kmer_utils.c b/src/c/kmer_utils.c index 20a79f4..b85dbda 100644 --- a/src/c/kmer_utils.c +++ b/src/c/kmer_utils.c @@ -156,6 +156,7 @@ unsigned long long * get_kmer_counts_from_file(const char *fn, const unsigned in free(line); free(str); + fclose(fh); return counts; } diff --git a/src/c/quikr_functions.c b/src/c/quikr_functions.c index 82af029..5715024 100644 --- a/src/c/quikr_functions.c +++ b/src/c/quikr_functions.c @@ -34,7 +34,6 @@ ssize_t getseq(char **lineptr, size_t *n, FILE *fp) { int result = 0; ssize_t cur_len = 0; - ssize_t len; if (lineptr == NULL || n == NULL || fp == NULL) { @@ -57,7 +56,6 @@ ssize_t getseq(char **lineptr, size_t *n, FILE *fp) { int newline = 0; for (;;) { - char *t; int i; i = getc (fp); @@ -353,7 +351,7 @@ struct matrix *load_sensing_matrix(const char *filename, unsigned int target_kme check_malloc(header, NULL); header = strncpy(header, buf, read - 1); if(header[0] != '>') { - fprintf(stderr, "Error parsing sensing matrix, could not read header\n"); + fprintf(stderr, "Error parsing sensing matrix, could not read header in line %llu\n", lineno); exit(EXIT_FAILURE); } lineno++; @@ -365,6 +363,7 @@ struct matrix *load_sensing_matrix(const char *filename, unsigned int target_kme for(j = 0; j < width; j++) { line = gzgets(fh, line, 32); + lineno++; if(line == NULL || line[0] == '>') { fprintf(stderr, "Error parsing sensing matrix, line %zu does not look like a value\n", lineno); exit(EXIT_FAILURE); |