aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--Makefile29
1 files changed, 29 insertions, 0 deletions
diff --git a/Makefile b/Makefile
index e69de29..06a35ab 100644
--- a/Makefile
+++ b/Makefile
@@ -0,0 +1,29 @@
+all: nbc python
+
+install:
+ @echo installing executable files to ${DESTDIR}${PREFIX}/bin
+ @mkdir -p ${DESTDIR}${PREFIX}/bin
+ @cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read
+ @cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers
+ @cp -vf src/python/quikr ${DESTDIR}${PREFIX}/bin/quikr
+ @cp -vf src/python/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train
+ @cp -vf src/python/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
+ chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read
+ chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers
+ chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr
+ chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train
+ chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
+ @cd src/python; python setup.py install
+
+nbc:
+ @echo "building nbc"
+ @cd src/nbc; make
+
+python:
+ @echo "configuring python"
+ @cd src/python; python setup.py build
+
+clean:
+ @echo "cleaning up"
+ @cd src/python; rm build -Rvf
+ @cd src/nbc; make clean