diff options
| -rwxr-xr-x | src/python/quikr.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/src/python/quikr.py b/src/python/quikr.py index 182fd74..225ea9b 100755 --- a/src/python/quikr.py +++ b/src/python/quikr.py @@ -62,7 +62,7 @@ def train_matrix(input_file_location, kmer): print "could not find kmer file" exit() - input_file = Popen(["probabilities-by-read", str(kmer), input_file_location, kmer_file_name] , stdout=PIPE) + input_file = Popen(["bash", "-c", "probabilities-by-read " + str(kmer) + " " + input_file_location + " <(generate_kmers 6)"], stdout=PIPE) # load and normalize the matrix by dividing each element by the sum of it's column. # also do some fancy rotations so that it works properly with quikr |