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| -rw-r--r-- | doc/cli.markdown | 1 | ||||
| -rw-r--r-- | doc/index.markdown | 3 | ||||
| -rwxr-xr-x | src/nbc/count | bin | 572503 -> 0 bytes | |||
| -rwxr-xr-x | src/nbc/probabilities-by-read | bin | 394061 -> 0 bytes |
4 files changed, 2 insertions, 2 deletions
diff --git a/doc/cli.markdown b/doc/cli.markdown index d4a1bb9..843bae9 100644 --- a/doc/cli.markdown +++ b/doc/cli.markdown @@ -73,7 +73,6 @@ multifasta\_to\_otu's arguments: OTU's) -t, --trained-matrix, the trained matrix -f, --trained-fasta, the fasta file database of sequences - -d, --output-directory, quikr output directory -l, --lamb, specify what size of lambda to use (the default value is 10,000) -k, --kmer, specify what size of kmer to use, (default value is 6) -j, --jobs, specifies how many jobs to run at once, (default=number of CPUs) diff --git a/doc/index.markdown b/doc/index.markdown index 738bc47..93688bc 100644 --- a/doc/index.markdown +++ b/doc/index.markdown @@ -1,7 +1,6 @@ # Quikr # This is the homepage for quikr. - ## What is Quikr ## Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to @@ -23,6 +22,8 @@ scripts, and matlab scripts. + [Python documentation](python.html) + [Command Line Utilities](cli.html) +## Contact ## +For issues with the python implementation, contact gailro@gmail.com ## Contributors ## + David Koslicki diff --git a/src/nbc/count b/src/nbc/count Binary files differdeleted file mode 100755 index 21b4e60..0000000 --- a/src/nbc/count +++ /dev/null diff --git a/src/nbc/probabilities-by-read b/src/nbc/probabilities-by-read Binary files differdeleted file mode 100755 index 08908cc..0000000 --- a/src/nbc/probabilities-by-read +++ /dev/null |