diff options
| -rwxr-xr-x | multifasta_to_otu.py | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/multifasta_to_otu.py b/multifasta_to_otu.py index e313e4a..ef7f5f6 100755 --- a/multifasta_to_otu.py +++ b/multifasta_to_otu.py @@ -76,12 +76,16 @@ def main(): results = pool.map(quikr_call, fasta_list) # Create a dictionary and load up our keys - + records = [] + + trained_matrix_headers = open(args.trained_matrix, "rU") + for record in SeqIO.parse(trained_matrix_headers, "fasta"): + records.append((record.id, 0)) + + records = dict(records) + - for fasta in fasta_list: - fasta_file = open(input_directory + fasta, "rU") - for record in SeqIO.parse(fasta_file, "fasta") : # load the keys with values from each fasta result |