diff options
| -rw-r--r-- | src/c/multifasta_to_otu.c | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/src/c/multifasta_to_otu.c b/src/c/multifasta_to_otu.c index 6d704dd..62d9222 100644 --- a/src/c/multifasta_to_otu.c +++ b/src/c/multifasta_to_otu.c @@ -208,12 +208,10 @@ int main(int argc, char **argv) { exit(EXIT_FAILURE); } - struct dirent result; - omp_set_num_threads(jobs); long done = 0; printf("Beginning to process samples\n"); -#pragma omp parallel for shared(solutions, sequences, width, result, done) + #pragma omp parallel for shared(solutions, sequences, width, done) for(long i = 0; i < dir_count; i++ ) { long z = 0; @@ -225,16 +223,18 @@ int main(int argc, char **argv) { exit(EXIT_FAILURE); } -#pragma omp critical - readdir_r(input_directory_dh, &result, &directory_entry); + #pragma omp critical + { + directory_entry = readdir(input_directory_dh); + strcpy(base_filename, directory_entry->d_name); + } - if(strcmp(directory_entry->d_name, "..") == 0 || strcmp(directory_entry->d_name, ".") == 0) { + if(strcmp(base_filename, "..") == 0 || strcmp(base_filename, ".") == 0) { i--; continue; } // get our base filenames - strcpy(base_filename, directory_entry->d_name); filenames[i] = base_filename; // get our real filename |