diff options
| author | Calvin <calvin@EESI> | 2013-03-14 13:35:25 -0400 |
|---|---|---|
| committer | Calvin <calvin@EESI> | 2013-03-14 13:35:25 -0400 |
| commit | 3013a131d14ee5c1414fbcd4343a4c937cc96a05 (patch) | |
| tree | ff90d062fc3b6473bc61ed2785619de513fe08be /src | |
| parent | cc1c9b8d2efc0d9f92d1263ab1e7b0082631015f (diff) | |
fix multifasta_to_otu to use proper function names... need to get some automatic unit testing going or something
Diffstat (limited to 'src')
| -rwxr-xr-x | src/python/multifasta_to_otu | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/src/python/multifasta_to_otu b/src/python/multifasta_to_otu index 1a4cb60..05cd8b4 100755 --- a/src/python/multifasta_to_otu +++ b/src/python/multifasta_to_otu @@ -145,7 +145,7 @@ def quikr_call(fasta_file): input_location = input_directory + fasta_file output_location = output_directory + os.path.basename(fasta_file) - xstar = q.quikr(input_location, trained_matrix, kmer, lamb) + xstar = q.calculate_estimated_frequencies(input_location, trained_matrix, kmer, lamb) np.savetxt(output_location, xstar, delimiter=",", fmt="%f") return xstar |