update to work with kmer rarity

1 files changed, 3 insertions, 4 deletions

diff --git a/src/c/quikr_functions.h b/src/c/quikr_functions.h
index 35e88ca..a5d0601 100644
--- a/src/c/quikr_functions.h
+++ b/src/c/quikr_functions.h
@@ -1,3 +1,5 @@
+// our malloc checker
+void check_malloc(void *ptr, char *error);
 // count the sequences in a fasta file
 unsigned long long count_sequences(const char *filename);
 
@@ -5,10 +7,7 @@ unsigned long long count_sequences(const char *filename);
 void normalize_matrix(double *matrix, int height, int width);
 
 // load a sensing matrix  
-struct matrix *load_sensing_matrix(const char *filename);
+struct matrix *load_sensing_matrix(const char *filename, unsigned int target_kmer);
 
 // add header and normalize count matrix
 double *setup_count_matrix(char *filename, unsigned long long kmer, unsigned long long lambda, unsigned long long width);
-
-// add header and normalize sensing matrix
-struct matrix *setup_sensing_matrix(char *filename, unsigned long long kmer, unsigned long long lambda, unsigned long long width);