Update multifasta_to_otu.py for new quikr function

  * Removed an old comment from the quikr function
  * Load the trained matrix from multifasta main.
  * This will reduce load times as we only need
    to call it once

1 files changed, 0 insertions, 3 deletions

diff --git a/quikr.py b/quikr.py
index 065590d..a6b8bd0 100755
--- a/quikr.py
+++ b/quikr.py
@@ -85,9 +85,6 @@ def quikr(input_fasta_location, trained_matrix, kmer, default_lambda):
   counts = default_lambda * counts
   counts = np.concatenate([np.zeros(1), counts])
 
-  # load our trained matrix
-
-
   #form the k-mer sensing matrix
   trained_matrix = trained_matrix * default_lambda;
   trained_matrix = np.flipud(trained_matrix);