updated docs

1 files changed, 32 insertions, 3 deletions

diff --git a/doc/install.markdown b/doc/install.markdown
index cbbbe21..82004aa 100644
--- a/doc/install.markdown
+++ b/doc/install.markdown
@@ -1,14 +1,32 @@
 # How Can I Install The Quikr Utility? #
 To use Quikr there are several prerequisites. 
 
-Base Requirements: 
-+ Mac OS X or GNU/Linux or Unix-based operating system+ 
-+ Python 2.7, Scipy, Numpy, BIOPython modules
+## Requirements ##
++ Mac OS X 10.6.8 or GNU/Linux
 + 4Gb of RAM minimum. Absolutely neccessary.
++ gcc that supports OpenMP
+
+### Python Requirements ###
++ Python 2.7
++ Scipy 
++ Numpy
++ BioPython
+
+### Mac Requirements ###
++ Mac OS X 10.6.8 (what we have tested)
++ GCC 4.7 or newer. (gcc 4.2 did not work, and is the default installation)
++ OCaml compiler mlton
++ OpenMP libraries (libgomp, usually comes with gcc)
+
+### Linux Requirements ###
++ GCC 4.7 or newer
++ OCaml compiler mlton
++ OpenMP libraries (libgomp, usually comes with gcc)
 
 We also have a Quikr implementation in Matlab so that you can easily integrate
 Quikr into your custom programs and scripts.
 
+### Installation ###
 Our Quikr code is available on our sourceforge download page:
 
 [http://sourceforge.net/projects/quikr/](sourceforge project page)
@@ -16,3 +34,14 @@ Our Quikr code is available on our sourceforge download page:
 Our development GIT repository is available here:
 
 [http://rosalind.ece.drexel.edu/git/quikr/](rosalind.ece.drexel.edu/git/quikr/)
+
+To install quikr, download our project and in the folder run:
+
+    make
+    sudo make install
+
+This will install the quikr, quikr\_train and multifasta\_to\_otu utilities.
+To install the python scripts and module systemwide, run
+
+    make python
+    sudo make install_python