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author | Calvin <calvin@EESI> | 2013-03-12 18:05:50 -0400 |
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committer | Calvin <calvin@EESI> | 2013-03-12 18:05:50 -0400 |
commit | fb3ed9e704c5ecd06da70a0c1ce0f0fc458de466 (patch) | |
tree | b3982c61557113e5485f40005b0a7128cd072f01 /doc/index.markdown | |
parent | a200b2df4212521b7e006f17979d7c4c2d4b8ca9 (diff) |
initial commit of some documentation
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-rw-r--r-- | doc/index.markdown | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/doc/index.markdown b/doc/index.markdown new file mode 100644 index 0000000..5b3c430 --- /dev/null +++ b/doc/index.markdown @@ -0,0 +1,30 @@ +# Quikr # +This is the homepage for quikr. + + +## What is Quikr ## +Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that +utilizes sparsity promoting ideas from the field of compressed sensing to +reconstruct the composition of a bacterial community (when the input data is +454-like pyrosequencing data). This extremely fast method comes with a default +training database but can be custom trained. Typically reconstruction is +accurate down to the genus level. + + +## How Do I Install Quikr ## +Please read the directions on the [installation page](install.html). + +## How Do I use Quikr ## +We have several ways to use quikr. There is a python module, command line +scripts, and matlab scripts. + ++ [Matlab documentation](matlab.html) ++ [Python documentation](python.html) ++ [Command Line Utilities](cli.html) + +## Contributors ## ++ David Koslicki ++ Gail Rosen ++ Calvin Morrison ++ Jean-Luc Bouchot + |