diff options
| author | Calvin <calvin@EESI> | 2013-05-14 21:12:26 -0400 |
|---|---|---|
| committer | Calvin <calvin@EESI> | 2013-05-14 21:12:26 -0400 |
| commit | 11fbd1d69236fee9c694a26b5e70e170aca9f02f (patch) | |
| tree | b7557d951f03f9413cbf387aa3e13d029404f032 | |
| parent | f53fc0eb3728f7933bf71c0090014f653b38861f (diff) | |
update makefile to include c
| -rw-r--r-- | Makefile | 33 |
1 files changed, 25 insertions, 8 deletions
@@ -1,31 +1,48 @@ -all: nbc python +PREFIX = "/usr/" +all: nbc c install: @echo installing executable files to ${DESTDIR}${PREFIX}/bin @mkdir -p ${DESTDIR}${PREFIX}/bin @cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read @cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers - @cp -vf src/python/quikr ${DESTDIR}${PREFIX}/bin/quikr - @cp -vf src/python/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train - @cp -vf src/python/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu - @cp -vf src/python/generate_kmers ${DESTDIR}${PREFIX}/bin/generate_kmers + @cp -vf src/c/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train + @cp -vf src/c/quikr ${DESTDIR}${PREFIX}/bin/quikr + @cp -vf src/c/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu - chmod -v 755 ${DESTDIR}${PREFIX}/bin/generate_kmers - @cd src/python; python setup.py install - + nbc: @echo "building nbc" @cd src/nbc; make +c: + @echo "building c" + @cd src/c; make python: @echo "configuring python" @cd src/python; python setup.py build +install_python: + @cd src/python; python setup.py install + @cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read + @cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers + @cp -vf src/python/quikr ${DESTDIR}${PREFIX}/bin/quikr.py + @cp -vf src/python/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train.py + @cp -vf src/python/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu.py + @cp -vf src/python/generate_kmers ${DESTDIR}${PREFIX}/bin/generate_kmers + chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read + chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers + chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr.py + chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train.py + chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu.py + chmod -v 755 ${DESTDIR}${PREFIX}/bin/generate_kmers + clean: @echo "cleaning up" @cd src/python; rm build -Rvf @cd src/nbc; make clean + @cd src/c; make clean |