diff options
| author | Calvin <calvin@EESI> | 2013-03-15 13:57:24 -0400 |
|---|---|---|
| committer | Calvin <calvin@EESI> | 2013-03-15 13:57:24 -0400 |
| commit | 852ee6695ed68f7a62a33f8c6fc340f1d2e2a35b (patch) | |
| tree | 8cebe039bea8b41bb620752b98121c0ea290ab27 | |
| parent | d39b5f8f11e25580a158893ca09a3ba2a5a2b5ab (diff) | |
updated multifasta_to_otu to is_compressed
| -rwxr-xr-x | src/python/multifasta_to_otu | 5 | ||||
| -rwxr-xr-x | src/python/quikr | 2 |
2 files changed, 3 insertions, 4 deletions
diff --git a/src/python/multifasta_to_otu b/src/python/multifasta_to_otu index dc82213..a2c9e1e 100755 --- a/src/python/multifasta_to_otu +++ b/src/python/multifasta_to_otu @@ -41,7 +41,7 @@ def main(): args = parser.parse_args() # our defaults - jobs=multiprocessing.cpu_count() + jobs = multiprocessing.cpu_count() trained_matrix = args.trained_matrix input_directory = args.input_directory output_directory = args.output_directory @@ -71,7 +71,7 @@ def main(): kmer = args.kmer # Load trained matrix - if q.isCompressed(args.trained_matrix): + if q.is_compressed(args.trained_matrix): trained_matrix_file = gzip.open(args.trained_matrix, "rb") else: trained_matrix_file = open(args.trained_matrix, "rb") @@ -140,7 +140,6 @@ def main(): return 0 - def quikr_call(fasta_file): input_location = input_directory + fasta_file output_location = output_directory + os.path.basename(fasta_file) diff --git a/src/python/quikr b/src/python/quikr index bac01ca..bc951c9 100755 --- a/src/python/quikr +++ b/src/python/quikr @@ -1,4 +1,4 @@ -#!/usr/bin/python +#!/usr/bin/python2.7 import sys import os import argparse |