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# dna-utils
This repository contains general utilities for processing sequences in fasta files.
### Tools included ###
kmer_total_count - this program will count each kmer in a fasta file, and print to standard out.
#### Usage
kmer_total_count filename kmer_size
# Example
calvin@barnabas:~/dna-utils$ ./kmer_total_count SuperManSequences.fasta 8
the order of the array corresponds to AAAA, AAAC, AAAG, AAAT and so on
usage: kmer_total_count -i input_file -k kmer [-n] [-l] ...
#### Licensing and Citation
Report all bugs to mutantturkey@gmail.com
Copyright 2014 Calvin Morrison, Drexel University.
If you are using any dna-utils tool for a publication
please cite your usage:
dna-utils. Drexel University, Philadelphia USA, 2014;
software available at www.github.com/EESI/dna-utils/
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