dna-utils.git - Tools for parsing FASTA files very fast

Age	Commit message (Collapse)	Author
2014-03-03	C++ version using unordered map	Calvin Morrison

2014-02-26	update sparse	Calvin Morrison

2014-02-18	working sparse implementation	Calvin Morrison

2014-02-02	add a helper function for python	Calvin Morrison

2014-02-01	remove str alloc and replace inside s for strstr	Calvin Morrison

2014-02-01	change headers, organize	Calvin Morrison

2014-01-30	kmer_count_per_sequence: add option to load specific mers from file, add ↵	Calvin Morrison
	multiline ecounting
2013-11-11	fix warnings	Calvin Morrison

2013-10-16	reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, ↵	Calvin Morrison
	error check kmer
2013-10-16	kmer utils.h	Calvin Morrison

2013-10-02	use an external iterator so that we can skip over anything in range of an errorw	Calvin Morrison

2013-10-02	update header	Calvin Morrison

2013-10-01	update headers, use const for better performance (.500ms on ~2gb file), ↵	Calvin Morrison
	update comments for functions
2013-09-10	Initial commit of some kmer utilities.	Calvin Morrison
	there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence