dna-utils.git - Tools for parsing FASTA files very fast

Age	Commit message (Collapse)	Author
2013-12-29	Namespace all the functions and make private ones static	orbitz

2013-12-29	Cleanup useless const decorators	orbitz

2013-11-11	fix warnings	Calvin Morrison

2013-10-16	reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, ↵	Calvin Morrison
	error check kmer
2013-10-16	kmer utils.h	Calvin Morrison

2013-10-02	use an external iterator so that we can skip over anything in range of an errorw	Calvin Morrison

2013-10-02	update header	Calvin Morrison

2013-10-01	update headers, use const for better performance (.500ms on ~2gb file), ↵	Calvin Morrison
	update comments for functions
2013-09-10	Initial commit of some kmer utilities.	Calvin Morrison
	there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence