| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2014-02-01 | remove str alloc and replace inside s for strstr | Calvin Morrison | |
| 2014-02-01 | change headers, organize | Calvin Morrison | |
| 2014-01-30 | kmer_count_per_sequence: add option to load specific mers from file, add ↵ | Calvin Morrison | |
| multiline ecounting | |||
| 2013-11-11 | fix warnings | Calvin Morrison | |
| 2013-10-16 | reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, ↵ | Calvin Morrison | |
| error check kmer | |||
| 2013-10-16 | kmer utils.h | Calvin Morrison | |
| 2013-10-02 | use an external iterator so that we can skip over anything in range of an errorw | Calvin Morrison | |
| 2013-10-02 | update header | Calvin Morrison | |
| 2013-10-01 | update headers, use const for better performance (.500ms on ~2gb file), ↵ | Calvin Morrison | |
| update comments for functions | |||
| 2013-09-10 | Initial commit of some kmer utilities. | Calvin Morrison | |
| there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence | |||
 |
index : dna-utils.git | |
| Tools for parsing FASTA files very fast |
| aboutsummaryrefslogtreecommitdiff |
path: root/kmer_utils.h