dna-utils.git - Tools for parsing FASTA files very fast

Age	Commit message (Expand)	Author
2014-01-15	fix counting to not be reversed, remove is_whitespace is_error_char and inste...	Calvin Morrison
2013-12-31	Remove need for strnstrip	orbitz
2013-12-31	Make functions static, move inner loop out to a function	orbitz
2013-12-31	Refactor out translation and error checking	orbitz
2013-12-31	Iterate in other direction	orbitz
2013-12-31	Remove fclose of file handle	orbitz
2013-12-29	Remove this shared thing...	orbitz
2013-12-29	Flip impossible ordering	orbitz
2013-12-29	Clneaup some whitespace, change how calloc called	orbitz
2013-12-29	Namespace all the functions and make private ones static	orbitz
2013-12-29	Clean up signed comparison warnings	orbitz
2013-12-29	Remove useless inline decorator	orbitz
2013-12-29	Align and label lookup map	orbitz
2013-12-29	Refactor to pull opening the file out of the count function	orbitz
2013-12-29	Cleanup indentation and whitespace	orbitz
2013-11-24	performance boost from skipping our first newline. It seems crazy, but this c...	Calvin Morrison
2013-11-23	fix labels, fix spelling of position	Calvin Morrison
2013-11-23	better allocation of memory, make sure to free other memory	Calvin Morrison
2013-11-15	Merge branch 'master' of github.com:mutantturkey/dna-utils	Calvin Morrison
2013-11-15	instead of bitshift, use a equality operator	Calvin Morrison
2013-11-11	fix memleak	Calvin Morrison
2013-11-11	index to kmerfunction	Calvin Morrison
2013-10-17	update kmer utils	Calvin Morrison
2013-10-16	added new functions	Calvin Morrison
2013-10-04	no more branching	Calvin Morrison
2013-10-02	use an external iterator so that we can skip over anything in range of an errorw	Calvin Morrison
2013-10-02	remove unused headers	Calvin Morrison
2013-10-01	update headers, use const for better performance (.500ms on ~2gb file), updat...	Calvin Morrison
2013-09-28	idea	Calvin Morrison
2013-09-14	improve performance of convert_kmer_to_index by using a bitwise OR to convert...	Calvin Morrison
2013-09-12	don't use strtol	Calvin Morrison
2013-09-11	update convert_kmer_to_index for brevity and clarity	Calvin Morrison
2013-09-11	add headers	Calvin Morrison
2013-09-10	Initial commit of some kmer utilities.	Calvin Morrison