| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2013-09-14 | improve performance of convert_kmer_to_index by using a bitwise OR to ↵ | Calvin Morrison | |
| convert our characters to lowercare: str[i] | Ox20, and reduce the number of switches as a result | |||
| 2013-09-12 | don't use strtol | Calvin Morrison | |
| 2013-09-11 | update convert_kmer_to_index for brevity and clarity | Calvin Morrison | |
| 2013-09-11 | add headers | Calvin Morrison | |
| 2013-09-10 | Initial commit of some kmer utilities. | Calvin Morrison | |
| there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence | |||
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index : dna-utils.git | |
| Tools for parsing FASTA files very fast |
| aboutsummaryrefslogtreecommitdiff |
path: root/kmer_utils.c