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path: root/kmer_frequency_per_sequence.c
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2013-10-31Revert "fix memset"Calvin Morrison
This reverts commit 8784d26bf275128935a1f682fab6cfff30d2e15b.
2013-10-31fix memsetCalvin Morrison
2013-10-16reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, ↵Calvin Morrison
error check kmer
2013-10-16frequency_per_sequence still needs refactoringCalvin Morrison
2013-10-10 don't use the num_to_index function for more speeeeedCalvin Morrison
2013-10-10don't depend on math.h's POW by using a bitshift instead:Calvin Morrison
2013-10-04no more branchingCalvin Morrison
2013-10-02provide errno error detailsCalvin Morrison
2013-10-02use an external iterator so that we can skip over anything in range of an errorwCalvin Morrison
2013-10-02for kmer frequence per sequence as wellCalvin Morrison
2013-09-28ideaCalvin Morrison
2013-09-13don't use strlen(line) when we already have that in the read variableCalvin Morrison
2013-09-11use right typesCalvin Morrison
2013-09-11move declarations to top, make sure to use the appropriate typeCalvin Morrison
2013-09-11add headersCalvin Morrison
2013-09-10Initial commit of some kmer utilities.Calvin Morrison
there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence