| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2014-04-14 | merge | Calvin Morrison | |
| 2014-04-14 | update makefile to remove all properly | Calvin Morrison | |
| 2014-04-11 | add dependencey in makefile | Calvin Morrison | |
| 2014-04-11 | Merge branch 'master' of github.com:mutantturkey/dna-utils | Calvin Morrison | |
| 2014-04-11 | tune to specific processor, speed boost | Calvin Morrison | |
| 2014-04-10 | use object for utils | Calvin Morrison | |
| 2014-04-09 | MERGE sparse trunk into master | Calvin Morrison | |
| 2014-03-12 | bump version | Calvin Morrison | |
| 2014-03-06 | add continuous to install path | Calvin Morrison | |
| 2014-03-06 | add kmer_continuous_count | Calvin Morrison | |
| this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit | |||
| 2014-02-02 | add install section | Calvin Morrison | |
| 2014-02-01 | add help function | Calvin Morrison | |
| 2014-02-01 | simplify makefile | Calvin Morrison | |
| 2013-11-07 | update makefile | Calvin Morrison | |
| 2013-11-07 | rename to counts per sequence, don't provide frequencies only counts | Calvin Morrison | |
| 2013-10-17 | update makefile with dependencies and proper static linking | Calvin Morrison | |
| 2013-10-17 | add a static library to our makefile | Calvin Morrison | |
| 2013-10-16 | update makefile | Calvin Morrison | |
| 2013-10-10 | don't use the num_to_index function for more speeeeed | Calvin Morrison | |
| 2013-10-10 | update makefile | Calvin Morrison | |
| 2013-10-02 | use an external iterator so that we can skip over anything in range of an errorw | Calvin Morrison | |
| 2013-10-02 | add so support for makfile | Calvin Morrison | |
| 2013-09-11 | fix binary name, and add -Wextra | Calvin Morrison | |
| 2013-09-10 | Initial commit of some kmer utilities. | Calvin Morrison | |
| there are two utilties included. one is kmer_frequency_per_sequence, which outputs a (m x n) matrix where m is the sequence, and n is the frequency of that nmer to occur in the given sequence. the other tool is kmer_total_count, which counts kmers for the total file, not just one sequence | |||
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index : dna-utils.git | |
| Tools for parsing FASTA files very fast |
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