aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2014-02-02add commentCalvin Morrison
2014-02-01remove str alloc and replace inside s for strstrCalvin Morrison
2014-02-01use pow_four insteadCalvin Morrison
2014-02-01add getopts to kmer_counts_per_sequene and sparse output optionsCalvin Morrison
2014-02-01change headers, organizeCalvin Morrison
2014-02-01use proper types, fix warnings, declare vars at top of section, take FILE in...Calvin Morrison
2014-02-01fix spacingCalvin Morrison
2014-02-01update types of functions, remove non existant include and se size_t for strn...Calvin Morrison
2014-02-01add --helpCalvin Morrison
2014-02-01backport stdin readingCalvin Morrison
2014-02-01get rid of position, add helpCalvin Morrison
2014-02-01use false instead of 0Calvin Morrison
2014-02-01add help functionCalvin Morrison
2014-02-01simplify makefileCalvin Morrison
2014-01-31remove commasCalvin Morrison
2014-01-31update readmeCalvin Morrison
2014-01-31add --help text for kmer_total_countCalvin Morrison
2014-01-31fix argv/c checkingCalvin Morrison
2014-01-30kmer_count_per_sequence: add option to load specific mers from file, add mult...Calvin Morrison
2014-01-07fix kmer_counts_per_sequence, make sure we convert the array fully, and updat...Calvin Morrison
2013-11-24performance boost from skipping our first newline. It seems crazy, but this c...Calvin Morrison
2013-11-23fix labels, fix spelling of positionCalvin Morrison
2013-11-23better allocation of memory, make sure to free other memoryCalvin Morrison
2013-11-15Merge branch 'master' of github.com:mutantturkey/dna-utilsCalvin Morrison
2013-11-15instead of bitshift, use a equality operatorCalvin Morrison
2013-11-11fix memleakCalvin Morrison
2013-11-11fix warningsCalvin Morrison
2013-11-11fix printfCalvin Morrison
2013-11-11added label and nonzero optionsCalvin Morrison
2013-11-11index to kmerfunctionCalvin Morrison
2013-11-07update makefileCalvin Morrison
2013-11-07rename to counts per sequence, don't provide frequencies only countsCalvin Morrison
2013-11-07rename to counts per sequence, don't provide frequencies only countsCalvin Morrison
2013-11-06fix freeCalvin Morrison
2013-10-31fix memset againCalvin Morrison
2013-10-31Revert "fix memset"Calvin Morrison
2013-10-31fix memsetCalvin Morrison
2013-10-23output individual kmers if requestedCalvin Morrison
2013-10-17update makefile with dependencies and proper static linkingCalvin Morrison
2013-10-17add a static library to our makefileCalvin Morrison
2013-10-17update kmer utilsCalvin Morrison
2013-10-16reorder kmer_utils.h, actually take a kmer value as argv[2] for frequency, er...Calvin Morrison
2013-10-16kmer utils.hCalvin Morrison
2013-10-16frequency_per_sequence still needs refactoringCalvin Morrison
2013-10-16works with multiline sequences, abstracted most code to kmer_utils.cCalvin Morrison
2013-10-16added new functionsCalvin Morrison
2013-10-16update makefileCalvin Morrison
2013-10-10 don't use the num_to_index function for more speeeeedCalvin Morrison
2013-10-10Merge branch 'master' of github.com:mutantturkey/dna-utils into HEADCalvin Morrison
2013-10-10update makefileCalvin Morrison
generated by cgit v1.2.1 (git 2.18.0) at 2024-05-18 07:23:36 +0000