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2014-09-08Merge pull request #4 from eclarke/masterHEADmasterCalvin Morrison
makefile corrections
2014-09-08remove g++ version name and -s flag (-s threw deprecation warnings)Erik Clarke
2014-09-08removed msseErik Clarke
2014-09-04modified to compile on MBA, 10.9.4, with gcc-4.8Erik Clarke
2014-06-19galaxy XMLCalvin Morrison
2014-04-20Merge work.ceux.org:/home/calvin/src/dna-utilsCalvin Morrison
2014-04-20use more normal g++ nameCalvin Morrison
2014-04-18add more testsCalvin Morrison
2014-04-18add not about osxCalvin Morrison
2014-04-18add OSX support, or any supprot for people without getlineCalvin Morrison
2014-04-15TODOs for performance ideasCalvin Morrison
2014-04-14small performance bump. don't strlen a file when we know it's len from strnstripCalvin Morrison
2014-04-14Revert "don't reduce"Calvin Morrison
This reverts commit d2a336a77494586296401bea6e73e096d8599d2c.
2014-04-14add offset for sequenceCalvin Morrison
2014-04-14don't reduceCalvin Morrison
2014-04-14fix malloc in locationsCalvin Morrison
2014-04-14mergeCalvin Morrison
2014-04-14update makefile to remove all properlyCalvin Morrison
2014-04-14remove kmer.pyCalvin Morrison
2014-04-14add some testing scripts i have had laying around, some fasta files, and ↵Calvin Morrison
make kmerlocations work
2014-04-11add dependencey in makefileCalvin Morrison
2014-04-11Merge branch 'master' of github.com:mutantturkey/dna-utilsCalvin Morrison
2014-04-11tune to specific processor, speed boostCalvin Morrison
2014-04-10add kemr locations a new toolCalvin Morrison
2014-04-10make sure arrays aer in utils.hCalvin Morrison
2014-04-10use object for utilsCalvin Morrison
2014-04-09kmer utils tooCalvin Morrison
2014-04-09MERGE sparse trunk into masterCalvin Morrison
2014-03-12fix missing breakv0.0.4Calvin Morrison
2014-03-12bump versionCalvin Morrison
2014-03-12Merge branch 'master' of github.com:mutantturkey/dna-utilsCalvin Morrison
2014-03-12reverse complimentCalvin Morrison
2014-03-12update cli for reverse-compliment countingCalvin Morrison
2014-03-06add continuous to install pathCalvin Morrison
2014-03-06update readme, add a check_null_ptr function to clear up clutterCalvin Morrison
2014-03-06update readme, add a check_null_ptr function to clear up clutterCalvin Morrison
2014-03-06add kmer_continuous_countCalvin Morrison
this tool will count continuously, instead of line by line. The way that this works out is something like this: test.fa > header 1 AAAAATTTTT > header 2 GGGGGAAAAA counting 6 mers, the program will count TTTGGG, TTGGGG, TGGGGG, like there was no header seperating them. This can be useful for certain tyeps of processing, like when the sequences are continuous from a genome. initial commit
2014-02-27use sparse always if we use --merCalvin Morrison
2014-02-27fixed sparse in combination with --mer-fileCalvin Morrison
2014-02-26add gpl3 licenseCalvin Morrison
2014-02-24add more verbose error messages and add more memory checksCalvin Morrison
2014-02-06whoops, count even if it's zeroCalvin Morrison
2014-02-05Merge branch 'master' of github.com:mutantturkey/dna-utilsCalvin Morrison
2014-02-05add example, rename variables, rename function, improve error function, ↵Calvin Morrison
check for types
2014-02-04add examples to readme.mdCalvin Morrison
2014-02-04don't inline hint, breaks clangCalvin Morrison
2014-02-02somewhat working python moduleCalvin Morrison
2014-02-02nonworking commit of interfaceCalvin Morrison
2014-02-02add a helper function for pythonCalvin Morrison
2014-02-02add install sectionCalvin Morrison
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